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Software

CellDesignerTM

CellDesigner is a structured diagram editor for drawing gene-regulatory and biochemical networks. Networks are drawn based on the process diagram, with graphical notation system proposed by Kitano, and are stored using the Systems Biology Markup Language (SBML), a standard for representing models of biochemical and gene-regulatory networks. Networks are able to link with simulation and other analysis packages through Systems Biology Workbench (SBW).

  • Biochemical, Gene Regulatory Networks Modeling with GUI
  • Visual Representation of Biochemical Semantics
  • Graphical Notation:
    CellDesigner supports graphical notation and listing of the symbols based on proposal by Kitano. Mostly compliant to SBGN Process Description Diagram notation.
  • Linkage to SBW-powered Simulator modules
  • SBML compliant
  • Easy data exchange with other SBML compliant application.

Check celldesigner.org for detail information.

iPathways

iPathways is an iPad/iPhone application to eExplore biological pathways on your palm!!
In comprehending the biological complexity of living systems in disease and healthy states, molecular pathway maps form an integral part of a researcher’s arsenal.

  • Extended pathway library (over 200 pathways)
  • Explore pathway channels: Cancer, Signaling, Panther pathways, KEGG metabolic pathways

Check ipathways.org for detail information.

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