Papers
  1. Funahashi, A.; Matsuoka, Y.; Jouraku, A.; Morohashi, M.; Kikuchi, N.; Kitano, H.; ."CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks", Proceedings of the IEEE Volume 96, Issue 8, Aug. 2008 Page(s):1254 - 1265
    [doi 10.1109/JPROC.2008.925458] Abstract  | Full Text: PDF (1379 KB)
  2. Hiroaki Kitano, Towards a theory of biological robustness, Molecular Systems Biology 3 Article number: 137 doi:10.1038/msb4100179, Published online: 18 September 2007
    Citation: Molecular Systems Biology 3:137
  3. Funahashi, A.. Jouraku, A.. Matsuoka, Y, Kitano, H., Integration of CellDesigner and SABIO-RK. In Silico Biology. 7 S1. 10, 2007
  4. Murray, DB, Beckmann, M, Kitano, H., Regulation of yeast oscillatory dynamics, PNAS. 104. 2241-2246. 2007.
  5. Kitano, H, A robustness-based approach to systems-oriented drug design, Nature Reviews Drug Discovery 6 , 202-210 (March 2007) | doi :10.1038/nrd2195
  6. Lloyd, D.. Murray, D.B.. The temporal architecture of eukaryotic growth. FEBS Lett. 2006 May 22;580(12):2830-5.
  7. Murray, D.B.. Lloyd, D.. A tuneable attractor underlies yeast respiratory dynamics. BioSystems. 2006.
  8. Shuichi Onami, Hiroaki Kitano, Genome-wide prediction of genetic interactions in a metazoan, BioEssays, 28: 1087-1090, 2006
  9. Moriya H, Shimizu-Yoshida Y, Kitano H (2006) In vivo Robustness Analysis of Cell Division Cycle Genes in S. cerevisiae PLoS Genet. DOI: 10.1371/journal.pgen.0020111.
  10. Kitano,H.; Oda, K.;, Self-Extending Symbiosis: A Mechanism for Increasing Robustness Through Evolution, Biological Theory Winter 2006, Vol. 1, No. 1: 61-66. 2006
  11. Oda.K; Kitano, H.; "A comprehensive map of the toll-like receptor signaling network", Mol Syst Biol : msb4100057. Apr. 18, 2006
  12. 長名 保範*. 吉見 真聡*. FPGAを用いた汎用生化学シミュレータReCSiP. 電子情報通信学会論文誌.
  13. Kitano, H.. Computational cellular dynamics: a network-physics integral. Nature Reviews Molecular Cell Biology. 7. 163.
  14. Kitano, H.and Oda, K.;"Robustness trade-offs and host–microbial symbiosis in the immune system", Mol Syst Biol 2(1): msb4100039-E1. Jan. 17, 2006
  15. Hiroi, N.; Funahashi, A.; Kitano, H.;"Comparative studies of suppression of malignant cancer cell phenotype by antisense oligo DNA and small interfering RNA", Cancer Gene Therapy. August 2005
  16. Kitano, H.et.al. "Using process diagrams for the graphical representation of biological networks", Nature Biotechnology  23(8), 961 - 966, 2005
  17. Murray, D.B. Lloyd D*. Ultradian metronome: timekeeper for orchestration of cellular coherence. Trends Biochem Sci. 30. 373-7. 2005.
  18. Oda, K.; Matsuoka, Y.; Funahashi, A.; Kitano, H.; A comprehensive pathway map of epidermal growth factor receptor signaling. Molecular Systems Biology. msb4100014. E1-17. 2005.
  19. Hamahashi S, Onami S, Kitano H. Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking. BMC Bioinformatics. 2005 May 24;6(1):125
  20. Mi, H., Lazareva-Ulitsky, B., Loo, R., Kejariwal, A., Vandergriff, J., Rabkin, S., Guo, N., Muruganujan, A., Doremieux, O., Campbell, M. J., Kitano, H., and Thomas, P. D.. The PANTHER database of protein families, subfamilies, functions and pathways. Nucl. Acids. Res., 31:334-341. 2005
  21. Kitano, H.. International alliances for quantitative modeling in systems biology. Molecular Systems Biology. Mar.29, 2005
  22. Murray, D.. Lloyd, D.*. Ultradian Clock Timekeeping: Periodic, Quasi Periodic and Chaotic Outputs. Trans. Biol. Biomed. 1. 390-394. 2004.
  23. Kitano, H., Oda, K., Kimura, T., Matsuoka, Y., Csete, M., Doyle, J., Muramatsu, M.. Metabolic Syndrome and Robustness Tradeoffs, Diabetes 53, S6-S15, 2004
  24. Kitano, H.. Biological Robustness. Nature Review Genetics. 5, 826-837, 2004
  25. Oda, K.; Kimura, T, Matsuoka, Y.; Funahashi, A.; Muramatsu, M.; Kitano, H. Molecular Interaction Map of Macrophage . AfCS Research Reports. 2004.
  26. M. Hucka; A. Finney; B.J. Bornstein; S.M. Keating; B.E. Shapiro; J. Matthews; B.L. Kovitz; M.J. Schilstra; A. Funahashi; J.C. Doyle; and H. Kitano Evolving a lingua franca and associated software infrastructure for computational systems biology: theSystemsBiologyMarkupLanguage(SBML) project. IEE Systems Biology. 1:41-53, 2004
  27. Kyoda. Baba. DBRF-MEGN method: an algorithm for deducing minimum equivalent gene networks from large-scale gene expression profiles of gene deletion mutants. Bioinformatics. 2004.
  28. Kitano, H. Cancer as a robust system: implications for anticancer therapy. Nature Reviews Cancer. 4, 3, 227-235, 2004.
  29. Sauro, H.; Hucka, M.; Finny, A.; Wellock, C.; Bolouri, H.; Doyle, J.; Kitano, H. Next Generation Simulation Tools: The Systems Biology Workbench and BioSPICE Integration. Omics, 7, 355-372, 2003
  30. Kitano, H.. A graphical notation for biochemical networks. BIOSILICO. 1. 169-176. 2003.
  31. Kitano, H.. Tumour tactics. Nature. 426:125. 2003.
  32. Funahashi, A., Tanimura, N., Morohashi, M., and Kitano, H., CellDesigner: a process diagram editor for gene-regulatory and biochemical networks, BIOSILICO, 1:159-162, 2003
  33. Yi, T.-M., Kitano, H., and Simon, M. I., A quantitative characterization of the yeast heterotrimeric G protein cycle, Proc. Natl. Acad. Sci., USA, 100:10764-10769, 2003 Abstract...
  34. Hucka, M.; Finney, A.; Sauro, H.M.; Bolouri, H.; Doyle, J.C.; Kitano, H. et al. The Systems Biology Markup Language(SBML): A Medium for Representation and Exchange of Biochemical Network Models. Bioinformatics. 19. 524-531. 2003.
  35. Funahashi, A.; Morohashi, M.; Hucka, M.; Finney, A.; Sauro, H.; Bolouri, H.; Doyle, J.; システムバイオロジーにおけるソフトウェア基盤. Nature. 423, Insight, 48-57, 2003.
  36. Kitano, H. Computational Systems Biology. Nature. 420:206-210. 2002.
  37. Morohashi, M.; Winn, A.; Borisuk, M.; Bolouri, H.; Doyle, J.; Kitano H. Robustness as a Measure of Plausibility in Models of Biochemical Networks. Journal of Theoretical Biology. 216, 19-30, 2002.
  38. Kitano, H. Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology. Current Genetics, 41, 1-10, 2002.
  39. Kitano, H. Standards for modeling. Nature Biotechnology. 20,4, 337, 2002.
  40. Doyle, J.; Csete, M. Reverse Engineering of Biological Complexity. Science. 295, 1664-1669, 2002.
  41. Kitano, H. Systems Biology: A Brief Overview. Science. 295, 1662-1664, 2002.
  42. Kubota, Y.; Bower, J. Transient and versus Asymptotic Dynamics of CaM Kinase II: possible roles of phosphatase. Journal of Computational Neuroscience, 2001.
  43. Ueda, H.; Hagiwara, M.; Kitano, H. Robust Oscillations within the Interlocked Feedback Model of Drosophila Circadian Rhythm. Journal of Theoretical Biology. 210, 401-406, 2001.
  44. 北野宏明. システム・バイオロジー概論. 人工知能学会誌. 15, 11?20, 2000.
  45. Kitano, H. Perspectives on systems biology. New Generation Computing Journal. 18(2000) 199-216, Ohmsha, Ltd. and Springer-Verlag, 99-216, 2000.
  46. Kyoda, K.; Morohashi, M.; Onami, S.; Kitano, H. A gene network inference method from continuous-value gene expression data of wild-type and mutants. Genome Informatics 2000. University Academy Press, 196-204, 2000.
  47. Yasuda, T.; Bannai, H.; Ohnami, S.; Miyano, S.; Kitano, H. Toward automatic construction of cell-lineage of C. elegans from nomarski DIC microscope images. Genome Informat-ics 1999. University Academy Press, 144-154, 1999.
  48. Nagasaki, M.; Ohnami, S.; Miyano, S.; Kitano, H. Bio-calculus: its concept and molecular interact. Genome Informatics 1999. University Academy Press,133-143, 1999.
  49. Kyoda, K.; Kitano, H. Simulation of genetic interaction for Drosophila leg formation. Pacific Symposium on Biocomputing f99. Hawaii, 77-89, 1999.
  Conference Papers
  1. Funahashi, A, Jouraku, A, Matsuoka, Y, Kitano, H., Integration of CellDesigner and SABIO-RK, In Silico Biology 7 S1, 10 (2007)
  2. Kitano, H.. The Theory of Biological Robustness and Its Implication in Cancer. Ernst Schering Research Foundation Workshop 61 - System Biology. 69-88.
  3. Kitano, H.. Challenges in Robust Situation Recognition through Information Fusion for Mission Criticial Multi-agent Systems. Lecture Notes in Artificial Intelligence 3020 RoboCup 2003: Robot Soccer World Cup VII.
  4. Prajna, S.; Papachristodoulou, A. Analysis of Switched and Hybrid Systems - Beyond piecewise quadratic methods. Proceedings of American Control Conference, 2003.
  5. Funahashi, A.; Kitano, H. Current implementation of CellDesigner and KEGG to SBML converter. First SBML Hackathon, Virginia, USA, July 28-Aug. 1, 2003.
  6. Papachristodoulou, A.; Prajna, S. On the construction of Lyapunov functions using the sum of squares decomposition. Proceedings of IEEE Conference on Decision and Control. 2002.
  7. El-Samad, H.; Khammash, M.; Kurata, H.; Yi, T.-M.; Doyle, J. C. Robustness Analy-sis of the heat shock response in E. coli. Proceedings of the American Control Con-ference, Anchorage, AK, 2002, pp. 1742-1747.
  8. 北野宏明. 癌に対するシステムバイオロジー的アプローチの可能性. ポストシークエンス時代における脳腫瘍の研究と治療(Dec. 4, 2001, 第10回脳腫瘍カンファランスProceedings). 21-26, 2002.
  9. Finney, A.; Hucka, M.; Sauro, H.; Bolouri, H.; Doyle, J.; Kitano, H. The Systems Biology Markup Language (SBML): A Standard for the Exchange of Biochemical Network Models. ICSB2001, Caltech, Nov. 4-7, 2001.
  10. Hucka, M.; Finney, A.; Sauro, H.; Bolouri, H.; Doyle, J.; Kitano, H. The ERATO Systems Biology Workbench:Architectural Evolution. ICSB2001, Caltech, Nov. 4-7, 2001.
  11. Kyoda, K.; Muraki, M.; Kitano, H. Construction of a generalized simulator for multi-cellular organisms and its application to SMAD signal transduction. Pacific Symposium on Biocomputing. 317-328, 2000.
  12. Kyoda, K.; Kitano, H. A model of axes determination mechanism for Drosophila wing disc. Advance in Artificial Life. Springer-Verlag, 472-476, 1999.
  13. Hamahashi, S.; Kitano, H. Parameter optimization in hierarchical structure. Advance in Artificial Life. Springer-Verlag, 467-471, 1999.
  14. Morohashi, M.; Kitano, H. Identifying gene regulatory network from time series expression data by in silico sampling and screening. Advance in Artificial Life. Springer-Verlag, 477-486, 1999.
  Meetings/Posters
    2008 (Sept)
  1. Kitano, H.. A robustness-based approach to systems-oriented drug design. 13th Annual Genome Meeting of HUGO: Human Genome Meeting 2008 (HGM2008). Sept 30, 2008
  2. ????. ????????????????????????. ???????? ?53???. Sept 28, 2008
  3. ????. ?????????????????????????. ??????????????????. ?41???????????. Sept 10, 2008
  4. ????. Untitled. ?????? ???????2008????. Aug 30, 2008
  5. Kitano, H.. Systems Biology for Global Climate and Energy Solutions. The 9th International Conference on Systems Biology (ICSB2008). Aug 24, 2008
  6. Yoshida, Y.. Moriya, H.. Effect of anticancer drugs to upper limit dosege of the cell cycle related genes in S. cerevisiae. The 9th International conference on Systems Biology (ICSB2008). Aug 24, 2008
  7. Saetre, R.. Kemper, B.. Text Mining Tools Integrated with Biological pathway - PathText/Payao Development: Text/Pathway Annotation. The 9th International Conference on Systems Biology (ICSB2008). Aug 24, 2008
  8. Ghosh, S.. Moriya, H.. A comprehensive molecular map of the budding yeast cell cycle. The 9th International Conference on Systems Biology (ICSB2008). Aug 24, 2008
  9. Suzuki, K.. Ghosh, S.. A comprehensive molecular map of crosstalk between the EGFR and the ER pathways in cancer cell lines. The 9th International Conference on Systems Biology (ICSB2008). Aug 24, 2008
  10. Huaiyu Mi1. Anushya Muruganujan1, Yukiko Masuoka2, Akira Funahashi2,3, Hiroaki Kitano2, Paul Thomas1. PANTHER Pathway Applet - An SBGN compatible pathway visualizing tool based on CellDesigner 4.0. The 9th International Conference on Systems Biology (ICSB2008). Aug 24, 2008
  11. Funahashi, A.1,2. Jouraku, Akiya1,2. CellDesigner4.0: A Modeling Tool for Biochemical Networks. The 9th International Conference on Systems Biology (ICSB2008). Aug 24, 2008
  12. Kaizu, K.. Yoshida, Y.. Stoichiometric regulation is a potential point of fragility in cellular systems: A case study in budding yeast cell cycle. The 9th International Conference on Systems Biology (ICSB2008). Aug 24, 2008
  13. Matsuoka, Y.. N Kikuchi, H Sugimura, A Hayama, H Kitano. "Payao": Web community tagging system to SBML models. The 9th International conference on Systems Biology (ICSB 2008). Aug 24, 2008
  14. Kitano, H.. Biological Robustness. SICE Annual Conference 2008 (International Conference on Instrumentation, Control and Information Technology). Aug 20, 2008
  15. ????. Sharing and Open Knowledge and the Future of Scientific Research. iSummit '08. Aug 1, 2008
  16. ????. ???????: ????????????????????. ???????????? ????(RoppongiBIZ)??? BIZ????. Jul 3, 2008
  17. ????. ?? ??. ??????????????in vivo????????. ?19??????????????. Jun 27, 2008
  18. ????. ????. ?????????ESP1?????????????????????. ???????????41??????. Jun 27, 2008
  19. ????. ?????????????????????????? "Systems Biology Approach to Toxicomics". ?35??????????????????????. Jun 26, 2008
  20. 北野??. A robustness-based approach to systems-oriented drug design. ??????????????????? ?????COE in silico medicine ?5????????? ????????????????????????. May 26, 2008
  21. Kitano, H.. A robustness-based approach to systems-oriented drug design. ??????????????? ?3???. May 20, 2008
  22. Kitano, H.. A robustness-based approach to systems-oriented drug design. Microsoft Research Cambridge Seminar. Apr 24, 2008
  23. Kitano, H.. Robustness-based approach to systems drug design: toward long-tail drugs. ESF-UB Conference in Biomedicine: Systems Biology. Apr 14, 2008
  24. ????. R&D Japan: ????????????????????????R&D????????. ?????????. Mar 25, 2008
  25. Kitano. H.. A robustness-based approach to systems-oriented drug design. Workshop: Haematopoiesis and its Disorders. Modelling, Experimental, and Clinical Approaches.. Mar 20, 2008
  26. Kitano, H.. SBGN: the systems biology graphical notation. Genomes to Systems Conference 2008. Mar 18. 2008
  27. ????. ??????????????????????. ?4????????????????????????. Feb 19. 2008
  28. Kitano, H.. Inter-sphere systems science: Scaling systems biology to mitigate global crisis. International Workshop on Future Challenges for Systems Biology. Feb 4, 2008
  29. Akira Funahashi*, Yukiko Matsuoka. CellDesigner 4.0beta. Super-hackathon "standards and ontologies for Systems Biology". Jan. 30. 2008

    2007
  30. 海津一成. 吉田由紀; 蒔苗浩司; 守屋央朗; 北野宏明. 出芽酵母における細胞周期関連遺伝子の遺伝的相互作用とロバストネス. 第30回日本分子生物学会年会・第80回日本生化学会大会 合同大会, Dec. 11-15, 2007
  31. 北野宏明. システムバイオロジーを活用した創薬. 政策研究大学院大学 第13回 トランスレーショナル研究推進上の課題等に関する研究会, Dec. 6, 2007 (Invited)
  32. 北野宏明. 「ネットワーク進化論」~生物学からのアプローチ. 野村総合研究所社内講演会, Dec. 4, 2007 (Invited).
  33. 北野宏明. システムバイオロジー概論. 神奈川科学技術アカデミー 平成19年度教育講座 シ ステムバイオロジーの展開動向, Nov. 14, 2007 (Invited)
  34. Kitano, H.. A robustness-based approach to systems-oriented drug design. American Association for Cancer Research Centennial Conference. Nov. 7, 2007 (Invited)
  35. 北野宏明. レガシー学会不要論 -インターネット時代の学会の矛盾とビジネスモデル-. 科学技術政策研究所所内講演会. Oct. 30, 2007 (invited)
  36. Kitano, H.. A robustness-based approach to systems-oriented drug design. SYSBIOHEALTH SYMPOSIUM 2007. Oct. 28, 2007 (Invited)
  37. Kitano, H.. Systems Biomedicine: A Legitimate Science?. International Conference on Complexity in Acute Illness. Oct. 5, 2007 (Invited)
  38. Kaizu, K. Yoshida, Y.. Revealing genetic interactions conferring robustness of the cell cycle in yeast by 2 dimensional genetic tug-of-war method. The 8th International Conference on Systems Biology, Oct. 2-4, 2007.
  39. Funahashi, A.1,2,*. Yukiko Matsuoka2,3, Akiya Jouraku1,2, Haruka Sugimura2, Yuichi Oikawa2, Norihiro Kikuchi4, Hiroaki Kitano2,3. CellDesigner 4.0beta: A Modeling Tool for Biochemical Networks. ICSB-2007 (The 8th International conference on Systems Biology). Oct. 2-4, 2007
  40. Kitano, H.1,2. Norihiro Kikuchi3, Haruka Sugimura2, Yukiko Matsuoka2. “Payao”: Web 2.0 community tagging system for biological networks. ICSB 2007. Oct. 2-4, 2007
  41. Kitano, H.1,. Akira Funahashi2, Michael Hucka3, Nicolas Le Novere4, Yukiko Matsuoka1 and the rest of the SBGN consortium . Systems Biology Graphical Notation. ICSB 2007. Oct. 2-4, 2007
  42. Kitano, H.. Biological Robustness. 21st International Mammalian Genome Conference (IMGC 2007). Oct. 28. 2007 (Invited)
  43. 北野宏明. ネットワークイノベーションのビジョン. THE NEW CONTEXT CONFERENCE 2007. Sept. 27, 2007 (Invited)
  44. Kitano, H.. A robustness-based approach to systems-oriented drug design. XXX Congress of The Spanish Biochemical Society. Sept. 12, 2007 (Invited)
  45. 海津一成. 吉田由紀. 出芽酵母における細胞周期関連遺伝子の量的遺伝的相互作用の検出. 酵母遺伝学フォーラム, Sept. 11-13, 2007
  46. 北野宏明. 情報技術は地球を実装できるか?. アースラウンジ vol.5 「Earth Coding-地球を実装せよ」 (2006年度上期未踏ソフトウェア創造事業 北野PM 開発成果報告会) 特別シンポジウム 「第1回 Earth Coding Meeting-地球を実装せよ」. Sept. 1, 2007
  47. Kitano, H.. Representing Genome Network in SBGN and SBML using CellDesigner. ゲノムネットワークプロジェクト 第2回発現クラスターワクショップ(Expression Cluster Workshop)メインミーティング. Jul. 18, 2007
  48. 北野宏明. システムバイオロジー. JST SORSTレクチャー会, Jul. 30, 2007 (Invited)
  49. 北野宏明. グランドチャレンジとしてのロボカップ. ロボスクエアリニューアルオープニング記念講演会, Jul. 20, 2007 (Invited)
  50. Kitano, H.. Biological Robustness and Drug Design, Systems Biology Workshop, Jul. 11, 2007
  51. 北野宏明. サイエンス&テクノロジーとデザインの近未来 知的創造のワークスペースで北野宏明氏と語る、ロボット、生物、デザイン・・・. DMN(ダイヤモンド デザインマネジメント ネットワーク機構)セミナー イノベーションの近未来予測(1).
  52. Kitano, H.. Robustness-based approach for systems-oriented drug design: Toward "long-tail drugs". Days of Molecular Medicine 2007: Emerging Technologies and Cancer Biology. May 24, 2007 (Invited)
  53. Kitano, H.. Robotics in the Service Industry, Home, and Society. シアトル市企業幹部研修団向けセミナー: 福岡のロボット産業. May 16, 2007 (Invited)
  54. 北野宏明. システムバイオロジー、ロボカップの展開とその戦略. 科学技術政策研究所シンポジウム 科学技術と未来をつなぐ ~ナイス ステップな研究者2006からのメッセージ~. Apr. 24, 2007
  55. Kitano, H.. The theory of biological robustness and its applications to medicine. Pharmaceutical Sciences World Congress 2007. Apr. 25, 2007 (Invited)
  56. Funahashi, A.. CellDesigner 4, towards CellDesigner 5. Second BioModels.net training camp. Jan.13-15, 2007 (Oral)
  57. Funahashi, A.. Jouraku, A.. CELLDESIGNER3.5: A PROCESS DIAGRAM EDITOR FOR GENE-REGULATORY AND BIOCHEMICAL NETWORKS. Computational Cell Biology. Mar. 6-9, 2007
  58. Hiroi, N.. Funahashi, A.. THE IMPACT OF SPATIAL RESTRICTION ON BIOLOGICAL SYSTEMS. Computational Cell Biology. Mar. 6-9, 2007
  59. 北野宏明. 生物学的ロバストネスの理論とその応用. 慶應義塾大学COEグローバルシンポジウム: ケミカルバイオロジーとシステムバイオロジーの融合. Mar. 10, 2007 (Invited)
  60. Kitano, H.. The theory of biological robustness and its applications to medicine. Leica Scientific Forum Heidelberg., Mar. 12, 2007 (Invited)
  61. Kitano, H.. Network, Robustness and Drug Design. USGEB 2007. Mar. 13, 2007 (Invited).
  62. Kitano, H.. The theory of biological robustness and its applications to medicine. Leica Scientific Forum Heidelberg. Mar. 12, 2007 (Invited).
  63. 北野宏明. システムバイオロジー研究の最前線. 情報処理学会 第69回全国大会. Mar. 7, 2007 (Invited).
  64. 北野宏明. 生物学的ロバストネスの理論とその応用. 慶應義塾大学COEグローバルシンポジウム: ケミカルバイオロジーとシステムバイオロジーの融合. Mar.10, 2007 (Invited).
  65. Funahashi, A.. Jouraku, A.. CELLDESIGNER3.5: A PROCESS DIAGRAM EDITOR FOR GENE-REGULATORY AND BIOCHEMICAL NETWORKS. Computational Cell Biology. Mar. 6-9, 2007.
  66. Hiroi, N.. Funahashi, A.. THE IMPACT OF SPATIAL RESTRICTION ON BIOLOGICAL SYSTEMS. Computational Cell Biology. Mar. 6-9, 2007.
  67. Funahashi, A.. CellDesigner 4, towards CellDesigner 5. Second BioModels.net training camp. Jan 13-15, 2007

  68. 2006
  69. Kitano, H.. The theory of biological robustness and its applications to medicine. Evolving Life Life Evolving: ELLE Dec.20, 2006 (Invited).
  70. 北野宏明. 癌のロバストネス. 第2回「四国工業研究会 次世代バイオナノ研究会」. Dec.8, 2006 (Invited).
  71. Hiroi, N.. Funahashi, A.. A kinetic modeling method for spatially restricted reactions. Winter Simulation Conference (WSC) Dec. 3-6, 2006.
  72. Funahashi, A.. Matsuoka, Y.. CellDesigner: A Modeling Tool for Biochemical Networks. Winter Simulation Conference (WSC) Dec. 6, 2006.
  73. 北野宏明. RoboCup and Robot Technology Industry. 青山1丁目プロジェクト「タワーフォーラム」. Nov.10, 2006 (Invited).
  74. Kitano, H.. Biological Robustness. The 3rd International E. Coli Alliance Conference on Systems Biology 2006 (IECA 2006). Nov. 2, 2006 (Invited)
  75. 北野宏明. Foundations of Sysytems Biology. GeneSpring「アレイデータ解析セミナー」. Oct. 31, 2006 (Invited)
  76. Kitano, H.. RoboCup and Robot Technology Industry. FISITA 2006 World Automotive Congress. Oct. 26, 2006 (Invited)
  77. 北野宏明. 癌のロバストネス. 第44回日本癌治療学会総会. Oct. 19, 2006 (Invited)
  78. Murray, D.. Lloyd, D.. The regulatory landscape of yeast systems energetics. ICSB2006. Oct. 2006
  79. Shimizu-Yoshida, Y.. Moriya, H.. Quantification of upper limit Cdc proteins dosage in S. cerevisiae. ICSB2006. Oct. 2006
  80. Funahashi, A.. Jouraku, A.. CellDesigner3.1: a process diagram editor for gene-regulatory and biochemical networks. ICSB2006. Oct. 2006
  81. Iwaoka, Y.. Osana, Y.. An acceleration of a biochemical simulator on programmable hardware. ICSB2006. Oct. 2006
  82. Kitano, H.. Hucka, M.. Sysetms biology graphical notation (SBGN) project. ICSB2006. Oct. 2006
  83. Hiroi, N. . Funahashi, A.. "Systems Energetics" -a new approach for cellular systems dynamics. ICSB2006. Oct. 2006
  84. Hiroi, N.. Funahashi, A.. in vivo reaction modeling by DRRK. ICSB2006. Oct. 2006
  85. Kitano, H.. Issues in Systems Biology. ICSB2006. Oct.9, 2006
  86. 北野宏明. 癌のロバストネス. 第65回 日本癌学会学術総会. Sept. 29, 2006 (Invited)
  87. Murray, D,B. . Lloyd, D.. Yeast temporal coherence. International Specialised Symposium on Yeasts 25. Jun. 18-21, 2006
  88. 守屋央朗. 出芽酵母の細胞分裂周期のシステム生物学. かずさDNA研究所. Sept. 28, 2006 (Invited)
  89. 北野宏明. 生物学的ロバストネス理論と医療への応用 The theory of biological robustness and its applications to medicine. 日本学術振興会ゲノムテクノロジー第164委員会 第3期キックオフシンポジウム 「環境から医学まで:ゲノムテクノロジーが変えるバイオ戦略」. Sept. 26, 2006 (Invited)
  90. Kitano, H.. Towards the Fundamental System Theory in Biology: The Theory of Biological Robustness. Towards 2020 Science Forum. Sept. 4, 2006 (Invited)
  91. Kitano, H.. The theory of biological robustness and its applications to medicine. SICE制御部門生物制御調査研究会第5回会合 Frontier Research System 20th Anniversary: International Workshop on Recent Advances in Biological Control. Jul. 29, 2006 (Invited)
  92. 北野宏明. 日本のロボット開発・ロボット競技の課題と展望. 日米ロボットセミナー. Jul. 21, 2006 (Invited)
  93. Kitano, H.. The theory of biological robustness and its applications to medicine. 17th International Symposium on Mathematical Theory of Networks and Systems. Jul. 25, 2006 (Invited)
  94. Hiroi, N.. Jouraku, A.. Kinetics for in vivo molecular diffusion. Conference on Systems Biology of Mammalian Cells. Jul.12-14, 2006
  95. 吉田由紀. 守屋央朗. 出芽酵母細胞周期関連(Cdc)蛋白質の上限. 酵母遺伝学フォーラム. Jul. 15-17, 2006
  96. 北野宏明. The theory of biological robustness and its applications to medicine. 花王株式会社 生物科学研究所 講演会. Jul. 5, 2006 (Invited)
  97. 北野宏明. Untitled. JAXAシンポジウム2006 宇宙航空最前線レポート. Jul. 4, 2006 (Invited)
  98. 北野宏明. ICCリニューアル・オープニング・シンポジウム「ネットワーク社会の文化と創造」 第三回「オープン・ネットワーク」 第二部「ネットワーク技術が変える知―情報化にともなう課題と展望」. Jun. 24, 2006 (Invited)
  99. Kitano, H.. Biological Robustness. International Specialised Symposium on Yeasts. ISSY25. Systems Biology of Yeasts ‐ From Models to Applications.. Jun. 21, 2006 (Invited)
  100. 北野宏明. Yeast Systems Biology Network (YSBN.org). 第17回酵母合同シンポジウム 原点としての酵母研究:温故と知新. Jun. 1, 2006 (Invited)
  101. 守屋央朗. 出芽酵母の細胞分裂周期のシステムバイオロジー. ナショナルバイオリソースプロジェクト(NBRP) シンポジウム 「酵母のポストゲノム研究とバイオリソース」. May 6, 2006 (Invited)
  102. 北野宏明. RT市場の幻と現実. 2006NEC TECHNOLOGY FORUM. Apr. 13, 2006 (Invited)
  103. 北野宏明. 癌のロバストネス. 久留米大学病院前立腺センター設立記念講演会. Apr. 21, 2006 (Invited).
  104. Kitano, H.. The theory of biological robustness and its applications to medicine. 3rd International Conference on Functional Genomics of Aging. Mar. 31, 2006 (invited)
  105. Moriya, H.. Shimizu-Yoshida, Y.. Upper limit dosage of genes involved in mitotic cycle in S. cerevisiae. Cell Regulations in Division and Arrest Workshop. Mar.6-9, 2006
  106. 北野宏明. 大学院大学キャンパスプランについて~大学院大学マスタープランから~. 沖縄科学技術大学院大学フォーラム 大学院大学とまちづくり ~大学院大学マスタープランから~. Mar. 4, 2006 (invited)
  107. 北野宏明. ロボット技術の最近の動向. 防衛庁学術講演会. Mar. 2, 2006 (invited)
  108. Kitano, H.. The theory of biological robustness and its applications to medicine. ESF-JSPS Follow-up Workshop on Functional Genomics From the Bench to Bioinformatics. Mar. 7, 2006 (invited)
  109. Kitano, H.. The Scope of Systems Biology. BBSRC/EPSRC National Workshop Systems Biology. Mar. 16, 2006 (Invited)
  110. 北野宏明. JAXA産学官連携シンポジウム「宇宙ビジネスの未来、新たな提言」. Jan. 17, 2006 (invited)

    2005
  111. 北野宏明. システムバイオロジーとはなにか?雲のつかみかたに関する一考察. 第28会日本分子生物学会年会 ワークショップ:W3O「システムバイオロジーとはなにか」.Dec. 9, 2005 (invited)
  112. 守屋央朗. 堀尾拓矢. 出芽酵母の細胞分裂周期のシステム生物学. 第27回 日本分子生物学会年会. Dec. 8, 2005
  113. 北野宏明. 生物学的ロバストネス理論とがんへのアプローチ. 第8回ヒューマンサイエンス総合研究ワークショップ「システムバイオロジーが拓く未来創薬/医療」. Nov. 25, 2005 (invited)
  114. 北野宏明. システムバイオロジーの展開. ゲノム・遺伝子発現研究戦略作業部会:ゲノムネットワーク研究の戦略的展開に関する打合せ. Nov. 17, 2005
  115. Kitano, H.. CellDesigner. BioPAX Japan F2F meeting techcical workshop. Nov. 17, 2005
  116. Kitano, H.. Cancer as a robust system: implications for anticancer therapy. Ernst Schering Research Foundation Workshop "Systems Biology - Applications and Perspectives". Nov. 11, 2005 (invited)
  117. Kitano. H.. Biological Robustness. Agilent Laboratories. Nov. 9, 2005 (invited)
  118. 北野宏明. システムバイオロジー概論. 神奈川科学技術アカデミー教育講座バイオインフォマティクスコース. Nov. 15, 2005 (invited)
  119. Moriya, H.. Horio, T.. In vivo robustness/sensitivity analysis of cell division cycle related genes in S. cerevisiae. Yeast Systems Biology Workshop. Oct. 23, 2005 (poster)
  120. Funahashi, A.. CellDesigner3.0: A Process Diagram Editor for Gene-regulatory and Biochemical Networks. The Tenth Workshop on Software Platforms for Systems Biology(Workshop of ICSB2005). Oct.23-24, 2005
  121. Kitano, H.. Theory of cancer robustness and its medical implications. Center for Cancer Systems Biology Seminar. Oct. 21, 2005 (invited)
  122. Hiroi, N.. Akira Funahashi, Akiya Jouraku, and Hiroaki Kitano. Dimension-restriction affects the reaction rate and accuracy.. ICSB2005. Oct.19-23, 2005 (poster)
  123. Moriya, H.. Horio, T.. In vivo robustness/sensitivity analysis of cell division cycle related genes in S. cerevisiae. ICSB2005. Oct. 19-23, 2006 (poster)
  124. Kitano, H.. Oda, K.. A comprehensive map of Toll-like receptor signaling network. ICSB2005. Oct.19-23, 2005 (poster)
  125. 北野宏明. Biological robustness and its implications on medicine. 第10回分子細胞生物学研究所シンポジウム「情報生物学」. Sept. 22, 2005 (invited)
  126. 北野宏明. システムバイオロジーの現状と展望. ゲノムフォーラム「わが国におけるゲノム研究の現状と今後の課題」. Sept. 18. 2005 (invited)
  127. 守屋央朗. 北野宏明. 出芽酵母の細胞周期関連遺伝子のin vivoロバスト性・感受性解析. 酵母遺伝学フォーラム 第38回年会. Sept. 6, 2005 (poster)
  128. 小田夏奈江*. 守屋央朗、松岡由希子、舟橋啓、北野宏明. CellDesigner 2.2 を用いた、出芽酵母の細胞周期・シグナル伝達経路の統括的マップの作成. 第38回酵母遺伝学フォーラム. Sept. 5-7, 2005 (poster)
  129. Kitano, H.. Biological robustness and its implication to medical practice. Seminar@Karolinska Intitutet. Aug. 26, 2005 (invited)
  130. Kitano, H.. Biological robustness and its implication to medical practice. 12th European Congress on Biotechnology (ECB12). Aug. 22, 2005 (invited)
  131. Kitano, H.. Biological robustness and its implication to medical practice. Functional Genomics conference. Aug. 29, 2005 (invited)
  132. Moriya, H.. Kitano, H.. In vivo robustness/sensitivity analysis of cell cycle-related genes in S. cerevisiae. XXII International Conference on Yeast Genetics and Molecular Biology. Aug. 7-12, 2005 (poster)
  133. Hiroi, N.. Funahashi, A.. Two Numerical Model Analyses of the Movement of a Restriction Enzyme. FOSBE 2005. Aug. 7-10, 2005 (poster)
  134. Hiroi, N.. Kitano, H.. Analysis for dimension-restricted kinetics with a bacterial endonuclease movement. 1st WSEAS International Conference:CELLULAR and MOLECULAR BIOLOGY - BIOPHYSICS and BIOENGINEERING 2005.Jul. 16, 2005 (oral)
  135. Kitano, H.. Biolobical robustness. International Symposium on Leading Project for Biosimulation Program. Jul.7-8, 2005 (invited)
  136. 北野宏明. Biological robustness and its implications on medicine. 癌研セミナー. Jul. 29, 2005 (invited)
  137. 守屋央朗. システム生物学的アプローチによる出芽酵母の細胞周期関連遺伝子の解析. 第170回 酵母細胞研究会. Jul 8, 2005 (invited)
  138. Hiroi, N.. Funahashi, A.. Analysis for the movement of a enzyme. 13th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2005). Jun. 23-29, 2005 (poster)
  139. 北野宏明. Biological Robustness. 21世紀COEプログラム「言語から読み解くゲノムと生命システム」特別講義. Jun. 23, 2005 (invited)
  140. 守屋央朗. 北野宏明. 出芽酵母の細胞周期関連遺伝子のin vivoロバスト性・感受性解析. 第7回システムバイオロジー研究会. Jun. 2, 2005
  141. 北野宏明. ロバスト・システムのトレードオフとしての糖尿病. 第48回日本糖尿病学会年次学術集会, シンポジウム14:システム生物学による糖尿病研究の新展開. May 14-26, 2005 (invited)
  142. Kitano, H.. Biological Robustness. International Workshop on Systems Biology 2005. May 12, 2005 (invited)
  143. Moriya, H.. Kitano, H.. Systems analysis of yeast glucose sensing system. First FEBS Advanced Course on Systems Biology: From Molecules & Modeling To Cells. Mar. 13, 2005 (poster)
  144. Funahashi, A.. Tanimura, N.. CellDesigner2.0: A process diagram editor for gene-regulatory and biochemical networks. First FEBS Advanced Course on Systems Biology: From Molecules & Modeling To Cells. Mar. 16, 2005 (poster)
  145. Hiroi, N.. Funahashi, A.. Two Numerical Model Analyses for the Movement of a Restriction Enzyme. First FEBS Advanced Course on Systems Biology: From M. Mar. 16, 2005 (poster)
  146. Murray, D.. Kitano, H.. Uncovering the control of the respiratory clock in yeast. First FEBS Advanced Course on Systems Biology: From M. Mar. 16, 2005
  147. Kitano, H.. Biological Robustness. Seminar@IMB, The Univ of Queensland. Mar. 3, 2005 (Invited)
  148. Douglas B. Murray. Uncovering the control of the respiratory clock in yeast. 基礎生物学研究所. Mar. 1, 2005 (Invited)
  149. 守屋央朗. 出芽酵母のグルコース感知機構の解析. 基礎生物学研究所. Mar. 1, 2005 (Invited)
  150. 北野宏明. Biological Robustness. JST異分野研究者交流領域探索プログラム「制御生物学の可能性を探る」第五回研究会. Jan. 25, 2005
  151. Kitano, H.. Biological Robustness. RTK Consortium Meeting. Jan. 19, 2005
  152. Kitano, H.. Biological Robustness and life in deep sea, space, and other extreme environment. University of Hawaii. Jan. 5, 2005 (Invited)

  153. 2004
  154. Funahashi, A.. Tanimura, N.. CellDesigner2.0: A Process Diagram Editor for Gene-regulatory and Biochemical Networks. GIW2004. Dec. 13-15, 2004
  155. 守屋央朗. Mark Johnston*1 北野宏明. 出芽酵母のグルコース感知機構の解析. 第27回 日本分子生物学会年会. Dec. 8, 2004
  156. 守屋央朗. 酵母のシステムバイオロジー研究 -細胞内プロセスをシステムとしてとらえる-. フロンティアセミナー(電気学会北陸支部主催). Dec. 3, 2004 (Invited)
  157. 北野宏明. RT市場の幻と現実 -スケールフリーマーケットを切り開く-. Global IP Business Exchange 2004. Nov. 18, 2004 (招待講演/基調講演)
  158. Funahashi, A.. Jyoraku, A.. Converting the KEGG Pathway Database to SBML. 5th International Conference on Systems Biology (ICSB2004). Oct. 9-13, 2004
  159. Funahashi, A.. CellDesigner and Hardware Accelerated Simulator. The 9th Workshop on Software Platforms for Systems Biology. Oct. 14-15, 2004
  160. Fujiwara, N.. Funahashi, A.. Dimension restricted model analysis reveals the restriction enzyme diffusion along DNA is linear but not sliding. 2nd International Conference on Pathways, Network, and Systems: Theory and Experiments. Oct. 15-20, 2004
  161. Kitano, H.. Robustness as the fundamental organizational principle of biological systems. The Abdus Salam International Centre for Theoretical Physics 40th Anniversary Conference. Oct. 4, 2004 (Invited)
  162. Hiroi, N.. Funahashi, A.. The numerical model analysis for restriction enzyme motion on the substrate DNA. 5th New England Biolabs meeting., Sept 5, 2004
  163. 北野宏明. Metabolic Syndromes and Robustness Trade-offs. 動脈硬化Update 2004. Sept. 4, 2004 (招待講演)
  164. 守屋央朗. 北野宏明. 出芽酵母のグルコース感知機構の解析システムバイオロジーによるアプローチ. 酵母細胞研究会. Sept. 9, 2004 (招待講演)
  165. 北野宏明. Cancer as a robust system. 武田薬品工業. Aug. 5, 2004 (招待講演)
  166. Kitano, H.. Cancer as a Robust System. Applied Biosysytems Scientific Community seminar. Jul. 14, 2004 (Invited)
  167. 北野宏明. Cancer as a Robust System. 癌研セミナー. Apr. 21, 2004 (招待講演)
  168. 北野宏明. Metabolic Syndromes and Robustness Trade-offs. 第4回神戸大学COE講演会. May 18, 2004 (招待講演)
  169. Kitano, H.. Perspectives of Systems Biology. SystemsX Symposium: Systems Biology Today and Tomorrow. Jun. 29, 2004 (invited)
  170. Kimura, T.; Oda, K.; Matsuoka, Y.; Muramatsu, M.; Kitano, H. A Model-based Analysis of Single- and Double-ligand Calcium Response Screening Data for Macrophage. Alliance for Cellular Signaling Annual Meeting.. May 23-26, 2004
  171. Funahashi, A.; Jouraku, A.; Kitano, H.. Converting KEGG pathway database to SBML. The 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB2004). Mar. 27-31, 2004
  172. Morohashi, M.; Ding, D.-Q.; Yamamoto, A.; Hiraoka, Y.; Onami, S.; and Kitano, H. Computational analysis of homologous chromosome pairing in fission yeast. The 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB2004). Mar. 27-31, 2004
  173. 北野宏明. システムバイオロジーの現状と展望. 財団法人 先端加工機械技術振興協会研究会 「機能性材料の3次元微細加工技術研究会」. Mar. 8, 2004 (招待講演)
  174. 北野宏明. システムバイオロジーのドラッグディスカバリーへの応用の可能性. 日経バイオビジネスフォーラムマンスリーセミナー, マツヤサロン, Feb. 26, 2004. (招待講演)
  175. 北野宏明. システムバイオロジーの現状と展開. オラクルエグゼクティブセミナー, 川奈ホテル, Jan. 30, 2004. (招待講演)
  176. 北野宏明. Perspectives in Systems Biology. 社団法人 電子情報技術産業協会 バイオインフォマティクス専門委員会, 電子情報技術産業協会, Jan. 23, 2004. (招待講演)
  177. 諸橋峰雄; 丁大橋; 山本歩; 平岡泰; 大浪修一; 北野宏明. テロメアが対合に及ぼす直接的役割とメカニズムに関するシミュレーション解析. 第21回染色体ワークショップ, 湯河原, Jan. 29-31, 2004.

  178. 2003
  179. 北野宏明. システムバイオロジー概論. 神奈川科学技術アカデミー教育講座バイオインフォマティクスコース, 東大医科研, Nov. 27, 2003. (招待講義)
  180. Kitano, H. Systems biology and drug discovery. Aventis Pharma, Vitry sur Seine, Dec. 12, 2003. (invited).
  181. Kitano, H. Systems biology approach to understand cellular functions. Bordeaux Univ. Seminar, Bordeaux Univ., Dec. 11, 2003. (invited).
  182. 北野宏明, システムバイオロジーの現状と展望, 富士総合研究所第一回バイオインフォマティクスセミナー. 富士総合研究所, Dec. 1, 2003
  183. 舟橋啓, ソフトウェアの統合と標準化の基盤、SBMLとSBW, 富士総合研究所第一回バイオインフォマティクスセミナー. 富士総合研究所, Dec. 1, 2003
  184. Kitano, H. Biological systems as robust systems: toward a theory of biological ro-bustness. International Symposium of 21st Century COE Program, Keio University: Understanding and Control of Life's Function via Systems Biology, Keio Univ., Nov. 20, 2003. (invited).
  185. 北野宏明. システムバイオロジーの疾病治療への応用の可能性. ゲノム創薬フォーラム第6回シンポジウム 機能ゲノミクスによる創薬標的分子のインベンション, 日本薬学会長井記念ホール, Nov. 17, 2003. (招待講演)
  186. Kitano, H. Systems-biological approach for understanding cellular functions: promise and challenges. GBF bioinformatic seminar, Germany, Nov. 12, 2003. (invited).
  187. Kitano, H. Systems Biology Approach to Understand Cellular Functions. 17th International Mouse Genome Conference, Germany, Nov. 12, 2003. (invited).
  188. Tanaka, H.; Kitano, H.; et al. Analysis of robustness in budding yeast mating signal transduction network. ICSB2003, Washington University in St Louis, Nov. 5-10, 2003.
  189. Hiroi, N.; Funahashi, A.; Nordling, Torbjorn EM.; Kitano, H. In silico analysis for anchorage independent cell cycle start mechanisms. ICSB2003, SBML/SBW workshop, Washington University in St Louis, Nov. 5-10, 2003.
  190. Funahashi, A.; Tanimura, N.; Kitano, H. CellDesigner: A Process Diagram Editor for Gene-regulatory and Biochemical Networks. ICSB2003, SBML/SBW workshop, Washington University in St Louis, Nov. 5-10, 2003.
  191. Kitano, H. Systems-biological approach for understanding cellular functions: promise and challenges. ICSB2003, Washington University in St Louis, Nov. 6, 2003. (featured)
  192. 北野宏明. システム生物学の現状と展望. 慶應義塾大学理工学部主催弁理士のための先端科学技術セミナー, 慶應義塾大学, Oct. 23, 2003.(招待講演)
  193. 北野宏明. システムバイオロジーの現状と展望. 東京大学計数工学特別講義, 東京大学, Oct. 28, 2003.(招待講演)
  194. Kitano, H. Toward the Theory of Biological Robustness. Pathways, Networks and Systems: Theory and Experiments, Greece, Oct. 2, 2003. (invited)
  195. 北野宏明. システムバイオロジーの展開 -生物学の新しいアプローチ-. 薬剤学会将来ビジョン委員会主催シンポジウム "システム薬剤学の幕開け", 東京大学, Sep 20, 2003. (招待講演)
  196. Kitano, H. Biological system as robust systems. Workshop on Control Theory for Systems Biology, MeSci, Sep. 18, 2003. (invited)
  197. 北野宏明. システムバイオロジーの展望. Sony Institute of Technology研修, ソニー・ヒューマンキャピタル, Aug 27, 2003. (招待講演)
  198. 北野宏明. ロバストシステムとしての生命. 第43回生化学若い研究者の会夏の学校, 国立オリンピック記念青少年総合センター, Aug. 8, 2003. (招待講演)
  199. Kitano, H. Systems Biology Approach to Understand Cellular Functions. The 5th In-ternational Workshop on Advanced Genomics, Yokohama, June 27, 2003. (invited).
  200. 北野宏明. Systems Biology Approach to Understand Cellular Functions. 文部科学省科学技術振興調整費「システム生物学者育成プログラム」シンポジウム:システム生物学の展開と人材育成, 慶應義塾大学, July 26, 2003.(招待講演)
  201. 北野宏明. システムバイオロジーの展望. 科学技術政策研究所所内講演会, 科学技術政策研究所, July 23, 2003.(招待講演)
  202. Kitano, H. A Systems Biology Approach to Understanding Cellular Functions. Be-yond Genome 2003, San Diego, June 19, 2003. (invited).
  203. 北野宏明. ロバストシステムとしての生命. 「ゲノムが意図する"生命の戦略"解明」シンポジウム, 日本学術会議講堂, May 23, 2003.(招待講演)
  204. Kitano, H. From the Cutting-Edge Front of Systems Biology - Systems-Biological Approach for Understanding Cellular Functions: Promise and Problems -, BIOLOGY AND BIOMEDICAL SCIENCES Seminar, Washington University in St. Louis, May 15, 2003. (invited).
  205. Kitano, H. NIEHS/VBI Conference-Toxicogenomics Through the Eyes of Informatics-, NIH, Bethesda, USA, May 12, 2003. (invited).
  206. 北野宏明. システム生物学. シンポジウム:「ゲノム科学の統合的推進に向けて:日本の計画・世界の計画」, 理化学研究所 横浜研究所, March 11, 2003.(招待講演)
  207. 北野宏明. システムバイオロジー小講演. 東京大学生産技術研究所, Jan 27, 2003.(招待講演)
  208. Bolouri, H.; Hucka, M.; Finney, A.; Sauro, H.; Funahashi, A.; Bornstein, B.; Kovitz, B.; Keating, S.; Matthews, J.; Shapiro, B.; Doyle, J.; Kitano, H. The Systems Biology Workbench(SBW) Version 1.0: Framework and Modules. PSB2003, Hawaii, Jan. 3-7, 2003.

    2002
  209. 大浪修一; 長﨑正朗; 濱橋秀互; 宮野悟; 北野宏明. 線虫C. elegans初期胚のコンピューター解析. 第23回日本分子生物学会年会 ワークショップ「高次生命現象を遺伝子でどこまで説明可能か?」, 神戸, Dec. 16, 2000.
  210. Morohashi, M.; Ding, D.; Yamamoto, A.; Hiraoka, Y.; Onami, S.; Kitano, H. Direct role of telomere clustering and nuclear movement on chromosome pairing. The 42nd Annual Meeting of the American Society for Cell Biology, San Francisco, Dec. 14-18, 2002.
  211. Kitano, H.; Yi, T.; Tanaka, H. Combining Modelling and Quantitative Measurements for Analysis of Robustness of Pheromone Response in Budding Yeast. ICSB2002, Stockholm, Dec. 14, 2002. (invited)
  212. Funahashi, A.; Kitano, H. Converting KEGG DB to SBML. ICSB2002, Stockholm, Dec. 12-15, 2002.
  213. Kitano, H. Graphical Notation for Biochemical Networks. ICSB2002 Workshop on SBML/SBW, Stockholm, Dec. 12, 2002.
  214. 諸橋峰雄; 丁大橋; 山本歩; 平岡泰; 大浪修一; 北野宏明. 染色体対合におけるテロメアクラスタと核運動の直接的作用. 第25回日本分子生物学会年会, パシフィコ横浜, Dec. 11-14, 2002.
  215. 北野宏明. システムバイオロジー. 東京大学広域科学科特別講義, 東京大学, Nov. 25, 2002. (招待講義)
  216. 北野宏明. システムバイオロジー概論. 神奈川科学技術アカデミーバイオインフォマティクスコース, 東大医科研, Oct. 30, 2002. (招待講義)
  217. 北野宏明. 癌細胞シミュレーションとシステム解析. 第61回日本癌学会総会, 東京, Oct. 2, 2002. (招待講演)
  218. Kitano, H. US-JAPAN Joint Workshop on Systems Biology of Useful Microorganisms, Tsuruoka Town Campus of Keio University, Sep. 16-20, 2002. (invited)
  219. 北野宏明. システムバイオロジーの現状. バイオインフォマティクス入門セミナー, 東京, Sep. 13, 2002. (招待講演)
  220. Kitano, H. Toward comprehensive simulation and analysis of intra-cellular and multi-cellular systems. GRC on Macromolecular Organization & Cell Function, Queen's College, Oxford, Aug. 4-9, 2002. (invited)
  221. Kitano, H. SBML and SBW: Software platform for systems biology. International Symposium on Macromolecular Networks, Pasteur Institute, Paris, July 8-11, 2002. (invited)
  222. 北野宏明. システム・バイオロジーの展開. 国際ネットワーク大学コンソーシアム共同授業, 岐阜県県民ふれあい会館, July 4, 2002. (招待講演)
  223. 北野宏明. システムバイオロジーの現状. バイオビジネス国際フォーラム, 青山ダイヤモンドホール, May 17, 2002. (招待講演)
  224. Kitano, H. Models of Signal Transduction. The 79th Annual Meeting of the Physiological Society of Japan, Hiroshima Prefectural Women’s Univ., Mar 29, 2002. (invited)
  225. Kitano, H. Systems Biology Approach to Understand Complex Cellular Functions. Joint Bio-vision Seminar organised by KI and RIKEN/GSC, Embassy of Sweden, Tokyo, Mar 19, 2002. (invited)
  226. 諸橋峰雄; 丁大橋; 山本歩; 大浪修一; 平岡泰; 北野宏明. シミュレーションによる酵母染色体の解析のための画像処理支援ツールの開発. 第19回染色体ワークショップ, 神戸, Jan. 30 - Feb. 1, 2002.
  227. Kitano, H. Modeling Issues in Cellular Systems for Systems Biology. Drug Discovery Japan Conference, Keio Plaza Inter-Continental Hotel, Tokyo, Jan. 28, 2002. (invited)
  228. 田村友紀; 濱橋秀互; 安生健一朗; 大浪修一; 北野宏明; 天野英晴. 細胞系譜構築システムのReconfigurable System による高速化. 電器情報通信学会コンピューターシステム研究会, パシフィコ横浜, Jan. 23-24, 2002.

    2001
  229. 北野宏明. システム生物学の展望. Sony Technology Week 2001, ソニー会館, Dec. 13, 2001. (招待講演)
  230. 北野宏明. システムバイオロジー基盤ソフトウエアSBW/SBMLとシグナル伝達カスケード解析事例. 第24回日本分子生物学会年会, パシフィコ横浜, Dec. 12, 2001. (招待講演)
  231. 京田耕司; 山口晋一; 大浪修一; 北野宏明. 最少数の遺伝子間相互関係で遺伝子発現データを表現する遺伝子ネットワーク推定アルゴリズム. 第24回日本分子生物学会年会, 横浜, Dec. 9-12, 2001.
  232. 濱橋秀互; 大浪修一; 北野宏明. ノマルスキー型微分干渉顕微鏡を用いた線虫C. elegansの細胞系譜自動構築システムの開発. 第24回日本分子生物学会年会, 横浜, Dec. 9-12, 2001.
  233. 諸橋峰雄; 丁大橋, 山本歩; 大浪修一; 平岡泰; 北野宏明. 酵母の核運動のシミュレーション解析. 第24回日本分子生物学会年会, 横浜, Dec. 9-12, 2001.
  234. 大浪修一; 濱橋秀互; 京田耕司; 山口晋一; 北野宏明. 線虫C. elegansの初期胚の細胞系譜自動解析とシステムバイオロジー解析 -現状と展望-. 第24回日本分子生物学会年会, 横浜, Dec. 9-12, 2001. (招待講演)
  235. 北野宏明. 癌を理解し制御するためのシステムバイオロジー・アプローチの可能性. 第10回日本脳腫瘍学会, 別府湾ロイヤルホテル, Dec. 4, 2001. (招待講演)
  236. Kitano, H. SBW/SBML: a software platform and standard for systems biology. ICSB2001, Caltech, Nov. 5, 2001. (invited)
  237. Kyoda, K.; Onami, S.; Kitano, H. The DBRF method for inferring a gene network from large-scale steady-state gene expression data. ICSB2001, Caltech, Nov. 4-7, 2001.
  238. 北野宏明. システム・バイオロジーの基盤システム構築とGPCRシステム解析. JBICシンポジウム「生命現象のネットワークシミュレーション」, ホリディ・イン東京, Sep. 14, 2001. (招待講演)
  239. 北野宏明. システムバイオロジー. 神奈川科学技術アカデミー バイオインフォマティクスコース. 東京大学医科学研究所, Sep. 14, 2001. (招待講義)
  240. Kitano, H. Systems Biology: Biology in the 21st century. TAKEOVER Symposium, Ars Electronica, Sep. 3, 2001. (invited)
  241. Kitano, H. Systems biology. Karolinska Institute, Aug. 26-28, 2001. (invited)
  242. Kitano, H. An interlocked feedback model of Drosophila circadian rhythm. Functional genomics ? the flowering future, Gothenburg, Aug. 23-24, 2001. (invited)
  243. Hamahashi, S.; Onami, S.; Kitano, H. Cell lineage acquiring system for early embryogenesis. 13th biennial International C. elegans Conference, Los Angeles, June 22-26, 2001.
  244. Onami, S.; Hamahashi, S.; Nagasaki, M.; Miyano, S.; Kitano, H. Automatic cell lineage acquisition system and analysis of early embryogenesis. 13th International C. elegans Meeting, Los Angeles, June 22-26, 2001.
  245. 北野宏明. イネ・システオーム解析. 「イネゲノムシミュレータの開発」計画発表会, つくば, May 16, 2001.
  246. Kitano, H. Perspectives of Systems Biology. Princeton Univ., Princeton, Feb. 9, 2001. (invited)
  247. 北野宏明. Systems Biology. 東京医科歯科大学セミナー(出井CEOの名代として), 大磯, Feb. 3, 2001. (招待講演)
  248. 北野宏明. Systems Biology. 京都大学主催 Bioinformatics, 京都, Jan. 25, 2001. (招待講演)
  249. Kitano, H.; Onami, S.; et al. A Simulation Software for Microtubule Dependent Pronucleus Migration in Early C. elegans embryo. Pacific Symposium on Biocomputing, Hawaii, Jan. 2001.
  250. Kitano, H.; Kyoda, K.; et al. Inference of a Gene Regulatory Network from Continuous Steady-State Gene Expression Data. Pacific Symposium on Biocomputing, Hawaii, Jan. 2001.

    2000
  251. 京田耕司; 諸橋峰雄; 大浪修一; 北野宏明. 野生型と単一遺伝子破壊型の発現データからの遺伝子ネットワーク推定手法. 第23回日本分子生物学会年会, 神戸, Dec. 16, 2000.
  252. 長﨑正朗; 大浪修一; 宮野悟; 北野宏明. 生命現象表現体系Bio-calculus:線虫C. elegans 初期胚生命現象の記述とシミュレーション. 第23回日本分子生物学会年会, 神戸, Dec. 16, 2000.
  253. 諸橋峰雄; Borisuk, M.; Winn, A.; Bolouri, H.; 北野宏明. 分岐解析を利用した生化学モデルのパラメータ空間構造分析. 第23回日本分子生物学会年会, 神戸, Dec. 16, 2000.
  254. 濱橋秀互; 大浪修一; 宮野悟; 北野宏明. ノマルスキー型微分干渉顕微鏡による線虫の細胞系譜自動構築システムの開発と応用. 第23回日本分子生物学会年会, 神戸, Dec. 13, 2000.
  255. 北野宏明. 郵政省 通信政策局技術開発推進課「生命体の情報機能に関する勉強会」. 大臣官房技術総括審議官室, Dec. 7, 2000. (招待講話)
  256. Morohashi, M.; Borisuk, M.; Bolouri, H.; Kitano, H. Identification of structural weaknesses in biochemical models through parameter sensitivity analysis. The 1st International Confer-ence on Systems Biology (ICSB), Tokyo, Nov. 2000.
  257. Kitano, H. The Systeome Project. The 1st International Conference on Systems Biology (ICSB), Tokyo, Nov. 2000.
  258. Onami, S. Automatic acquisition of cell lineage through 4D microscopy and analysis of early C. elegans embryogenesis. The 1st International Conference on Systems Biology (ICSB), Tokyo, Nov. 2000.
  259. Yi, T. Constructing mathematical models biological signal transduction pathways. The 1st International Conference on Systems Biology (ICSB), Tokyo, Nov. 2000.
  260. Kyoda, K.M.; Morohashi, M.; Onami, S. Inference of a gene regulatory network using steady-state expression data. The 1st International Conference on Systems Biology (ICSB), To-kyo, Nov. 2000.
  261. Bolouri, H.; Finney, A.; Hucka, M.; Sauro, H.; Doyle, J.; Kitano, H. Caltech ERATO Kitano Systems Biology Group. The ERATO systems biology workbench: an integrated environ-ment for multiscale & multi-theoretic simulations of molecular biology. The 1st Interna-tional Conference on Systems Biology (ICSB), Tokyo, Nov. 2000.
  262. Kitano, H. Perspective on systems biology. The 1st International Conference on Systems Biology (ICSB), Tokyo, Nov. 2000.
  263. Kyoda, K.; Morohashi, M.; Kitano, H.; CALTECH Unit members. Software platform for systems biology. RECOMB 2000. The Fourth Annual International Conference on Computa-tional Molecular Biology, Tokyo, April 2000.
  264. 北野宏明. ガンへのコンピュータシミュレーションからのアプローチ. 日本癌学会第59回総会, 横浜, Oct. 2000. (招待講演).
  265. Morohashi, M.; Kyoda, K.; Onami, S.; Mjolsness, E.; Kitano, H. Reverse engineering in sys-tems biology: towards inference of a gene regulatory network. RECOMB 2000. The Fourth An-nual International Conference on Computational Molecular Biology, Tokyo, April 2000.
  266. Onami, S.; Miyano, S.; Kitano, H. Development of a system for automatic construction of cell-lineage of C. elegans from nomarski DIC. RECOMB 2000. The Fourth Annual Interna-tional Conference on Computational Molecular Biology, Tokyo, April 2000.
  267. Onami, S.; Miyano, S.; Kitano, H. Bio-calculus: its concept, and an application for molecu-lar interaction. RECOMB 2000. The Fourth Annual International Conference on Computa-tional Molecular Biology, Tokyo, April 2000.

    1999
  268. 北野宏明, 発生現象の理解に向けたシステム・バイオロジーからのアプローチ. 第22回日本分 子生物学会年会, 福岡, Dec. 8, 1999. (招待講演).
  269. 村木倫子; 京田耕司; 北野宏明. ショウジョウバエの翅原基の前後軸にかかわるシグナル伝達 系のシミュレーション. 第22回日本分子生物学会年会, 福岡, Dec. 7-10, 1999.
  270. 京田耕司; 北野宏明. ショウジョウバエの肢および翅原基における遺伝子発現のシミュレーション. 第22回日本分子生物学会年会, 福岡, Dec. 7-10, 1999.
  271. 諸橋峰雄; 北野宏明. 時系列発現プロファイルからの遺伝子ネットワークの推定. 第22回日本分子生物学会年会, 福岡, Dec. 7-10, 1999.
  272. 大浪修一; 宮野 悟; 北野宏明. 生命表現体系Bio-Calculus: 概念および分子間相互作用. 第22回日本分子生物学会年会, 福岡, Dec. 7-10, 1999.
  273. 大浪修一; 宮野 悟; 北野宏明. ノマルスキー顕微鏡画像を用いた線虫核認識 細胞系譜自動構 築システムの開発. 第22回日本分子生物学会年会, 福岡, Dec. 7?10, 1999.
  274. 北野宏明, システムバイオロジーの展望. 日本生化学会, 横浜, Oct. 9, 1999. (招待講演).
  275. 濱橋秀互. システムバイオロジー; コンピュータを用いて生命現象を理解する. 化学工学会秋季 大会, 金沢, Sep. 27, 1999. (招待講演).
  276. Ueda, H.; Kitano, H.; Hashimoto, S.; Hagiwara, M. A computer simulation for genetic interaction of circadian rhythm, International Congress on Chronobiology, Washington DC, USA, Aug. 28?Sep. 1, 1999.
  277. Kyoda, K.; Muraki, M.; Kitano, H. Systems biology : an initial report part I&II. In Silico Bi-ology, San Francisco, USA, June 6?8, 1999.
  278. Morohashi, M.; Hamahashi, S.; Kitano, H. Systems biology: theory, modeling, and experi-ment part I&II. In Silico Biology, San Francisco, USA, June 6?8, 1999.
  279. Kyoda, K.; Kitano, H. Simulation of genetic interaction for Drosophila leg formation. 40th Annual Drosophila Research Conference, Bellevue, US, March 12, 1999.
  280. Hamahashi, S.; Kitano, H. HHComputer simulation of Drosophila segmentation. 40th Annual Drosophila Research Conference, Bellevue, US, March 12, 1999.
  281. Ueda Y.; Kitano, H. Simulation of Drosophila eye formation. 4th Hamamatsu International Symposium on Biology: Computational Biology, Hamamatsu, Feb. 10?12, 1999.
  282. Kyoda, K.; Kitano, H. Simulation of Drosophila leg formation. 4th Hamamatsu Interna-tional Symposium on Biology: Computational Biology, Hamamatsu, Feb. 10?12, 1999.
  283. Kitano, H. Systems biology: toward system level understanding of biological systems. 4th Hamamatsu International Symposium on Biology: Computational Biology, Hamamatsu, Feb.10-12, 1999. (invited).
  Reviews
  1. ????. ?????????????. BIO INDUSTRY. ????????. 25. 2008. 9-19.
  2. ????. ?????????????:????????????. ???? 9???? ???????'07?. ?????. 62. 2007. 2108-2123.
  3. Kitano, H.. Intelligence in a changing world (Review of the book "How the Body Shapes the Way We Think: A New View of Intelligence"). Nature. Nature Publishing Group. 447. 2007. 381-382.
  4. Kitano, H.. Robustness from top to bottom. Nature Genetics 38 , 133 (2006) doi:10.1038/ng0206-133
  5. Kitano, H. Life sciences need systems approach. The Nikkei Weekly, Nov. 6, 2000, Editorial & Opinion.
  Books
  1. Choi, Sangdun ed. Introduction to Systems Biology. Humana Press, NJ, USA.. Jul. 2007.
    • [Book Chapters]
    • Kitano, H.. Scientific Challenges in Systems Biology.
    • Hiroi, N.. Funahashi, A.. Kinetics of Dimension-Restricted Conditions.
    • Shapiro, B. E.. Finney, et.al. A.. SBML Models and MathSBML.
    • Funahashi, A.. Morohashi, M.*. CellDesigner: A Graphical Biological Network Editor and Workbench Interfacing Simulator..
  2. Andrew Finney. Michael Hucka, Benjamin J. Bornstein, Sarah M. Keating, Bruce E. Shapiro, Joanne Matthews, Ben L. Kovitz, Maria J. Schilstra, Akira Funahashi, Hiroaki Kitano. Software Infrastructure for Effective Communication and Reuse of Computational Models. System Modeling in Cellular Biology. Apr. 2006
  3. Kitano, H.. Theory of Cancer Robustness. Cancer Bioinformatics: From Therapy Design to Treatment. John Wiley & Sons, Ltd. Jan. 2006.
  4. Kitano, H.. Scientific and Technical Challenges for Systems Biology. Topics in Current Genetics. Nov. 2005
  5. Kitano, H. ed. Foundations of Systems Biology. The MIT Press, 2001.
      [Book Chapters]
    • Hucka, M.; Finney, A.; Sauro, H.; Bolouri, H.; Doyle, J.; Kitano, H. The ERATO Systems Biology Workbench: An Integrated Environment for Multiscale and Multitheoretic Simulations in Systems Biology., 125-143.
    • Onami, S.; Kyoda, K.; Morohashi, M.; Kitano. H. The DBRF Method for Inferring a Gene Network from Large-Scale Steady-State Gene Expression Data, 59-75.
    • Onami, S.; Hamahashi, S.; Nagasaki, M.; Miyano, S.; Kitano, H. Automatic acquisition of cell lineage through 4D microscopy and analysis of early C. elegans embryogenesis, 39-55.
    • Kitano, H. Systems Biology: Toward System-level Understanding of Biological Systems., 1-36.

1999-2007 Kitano Symbiotic Systems Project - Last update 09/11/11

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